PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0684s0120.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 375aa    MW: 41366.2 Da    PI: 6.7861
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0684s0120.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.45.5e-21174224256
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                              y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  SapurV1A.0684s0120.1.p 174 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 224
                             59******9.**********965...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.15E-34173233No hitNo description
PROSITE profilePS5103223.235174231IPR001471AP2/ERF domain
SMARTSM003804.4E-38174237IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-23174232IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-32174232IPR001471AP2/ERF domain
PRINTSPR003673.7E-11175186IPR001471AP2/ERF domain
PfamPF008471.9E-14175224IPR001471AP2/ERF domain
PRINTSPR003673.7E-11197213IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MSAAIDIYSA PVQAFSDPCR EELMKALEPF MKSASPSPTS TSYSSPSPST SSPSFSSYPP  60
CFYSNNSPIS SYPNLDLSFC SPTSTQMFSN GFLDYSQMGY EQTGPIGLNH LTPSQILQIQ  120
AKIHLQQQQQ QQKMENVAAT PQFVHNQRAS NFLAPKAVPM KQSAASSPHK PTKLYRGVRQ  180
RHWGKWVAEI RLPKNRTRLW LGTFDTAEEA ALAYDKAAYK LRGEFARLNF PHLRHQGAHV  240
SGEFGDYKPL HSSVDAKLQA ICQSLGLQKQ GKSREPCSAA NSKKTAPATL QAKIEDDCSL  300
KGALKTEYEN FGVEDYKVEM PSPSPASSDE SLAGSSSPES EISFLDFSDS LQRDEFENFG  360
LEKYPSVEID WSSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21173231160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5974990.0EF597499.1 Populus euphratica dehydrate responsive element-binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307098.10.0hypothetical protein POPTR_0005s07900g
TrEMBLB9H5440.0B9H544_POPTR; Uncharacterized protein
STRINGPOPTR_0005s07900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-56related to AP2 4